Publications

1. Porter, S. and Bryans, M. and Vemu, S. and Kamajaya, A. and Ives, F. and Dillman, A. and Mann, C. and Smith, T. Todd Smith "Igniting Creativity: Hackathons for Developing Undergraduate Research Projects in Antibody Engineering" Journal of Advanced Technological Education, 2(2), 2023, doi: 10.5281/zenodo.8124853

2. Porter, Sandra G. and Smith, Todd M. "Teaching Team Science Through Hackathons" OMICS: A Journal of Integrative Biology , v.26 , 2022 https://doi.org/10.1089/omi.2022.0102.

3. Porter, S., Hilgert, U., Lannan, E., Stieber, M. (2022). Evaluating the potential for immune escape: how likely is an antibody to protect against a specific SARS-CoV-2 variant?. Antibody Engineering, QUBES Educational Resources. doi:10.25334/82D0-AT65.

4. Mallari, M., Vemu, S., Carson, V., Afshar, G., Rodriguez Estrada, A., Wilson, C., and Porter, S. Using the IEDB to Predict Proteasomal Cleavage Events and T-cell Epitopes. QUBES Educational Resources.doi. 10.25334/ADRK-9S16.

5. Sanchez Rocha, J. and Anderson, B. and Morales, J. and Salgado, C. and Jarjapu, M. and Mendes, M. and Blazeska, N. and Vemu, S. "Mapping Immunogenic Regions In SARS-CoV-2 to Understand Vaccine Design Using Bioinformatics" Journal of Advanced Technological Education, 2(2), 2023, doi 10.5281/zenodo.8260361.

6. Biotechopoly™ Antibody Edition (2023) https://www.thegamecrafter.com/games/biotechopoly-antibody-edition.

7. Porter, Sandra G. and Smith, Todd M. "Combining iCn3D and NextStrain to create a novel undergraduate research experience around SARS-CoV-2 variants and commercial antibodies" Frontiers in Genetics, v.14, 2023 https://doi.org/10.3389/fgene.2023.1024063.

8. Wang, Jiyao and Youkharibache, Philippe and Marchler-Bauer, Aron and Lanczycki, Christopher and Zhang, Dachuan and Lu, Shennan and Madej, Thomas and Marchler, Gabriele H. and Cheng, Tiejun and Chong, Li Chuin and Zhao, Sarah and Yang, Kevin and Lin, Jack "iCn3D: From Web-Based 3D Viewer to Structural Analysis Tool in Batch Mode" Frontiers in Molecular Biosciences, v.9, 2022 https://doi.org/10.3389/fmolb.2022.831740.

9. Sterling, A., Lannan, E., Porter, S. (2024). Evaluating the potential for immune escape: how likely is an antibody to protect against a specific SARS-CoV-2 variant?. Antibody Engineering, (Version 2.0). QUBES Educational Resources. doi:10.25334/Q7KG-5V20

10. Koudjiwan, P., Anderson, B., Vitalis, B., Katele, M., Hser, E., Jackson, G., Malagon, J., Sanchez, J., Zakariya, J., Rojas Jr., A., Smith, C., Blazeska, N., Koşaloğlu-Yalçın, Z., & Vemu, S. (2024). Predicting Neoantigens for Cancer Using Next-Generation IEDB & CEDAR Tools. Journal of Advanced Technological Education (J ATE), 3(2). https://doi.org/10.5281/zenodo.13345146

11. Fredericks, J., Milligan, S., Doshi, H., Bryans, M. (2024). Comparison of Cryopreservation Conditions on the Performance of NISTCHO Cells. Journal of Advanced Technological Education (J ATE), 3(2). https://doi.org/10.5281/zenodo.13315670

12. Nadour, S., Clement, K., Doshi, H., & Bryans, M. (2024). Assessing the Stability of NISTCHO Cells in Long-Term Culture. Journal of Advanced Technological Education (J ATE), 3(2). https://doi.org/10.5281/zenodo.13546665

13. Lannan, E., Sterling, A., Hu, Y., & Porter, S. (2024). Applying Nextstrain and iCn3D to modify and expand an existing activity for undergraduate students characterizing potential binding of antibodies to mutations in the pathogens Influenza, Respiratory Syncytial Virus (RSV), or Enterovirus D68. Journal of Advanced Technological Education (J ATE), 3(2). https://doi.org/10.5281/zenodo.13357349