Immunoprofiling Resources
Essential Resources
| Resource | Description |
|---|---|
| What is Immunoprofiling (aka Immune Profiling) | Provides an introduction. Provides background about immunoprofiling's importance and describes the general sample to results workflow. |
| How Does Immunoprofiling Work? | Provides genetic maps of antibodies and T-Cell receptor genes and discusses how immune receptor diversity is created via gene rearrangement. After the biology background immunoprofiling experimental details are described. |
| BCR is the New Antibody, TCR is still a T Cell Receptor | Compares and contrasts antibodies and T-Cell receptors with an info graphic and accompanying text. |
| How is a Bioinformatician Like Odysseus? | Documentation, in a story format, about how to set a cloud computing resource for immunoprofiling. Needs to be updated for this hackathon. |
| ImmunoSeq Analyzer (Adaptive Biotechnologies) | A tool we will use for comparative bioinformatics. |
| T-cell receptor sequencing of early stage breast cancer tumors identifies altered clonal structure of the T-cell repertoire | An example dataset, overview with links to data, for comparative bioinformatics. |
Additional background links
| Resource | Description |
|---|---|
| Teaching Immuno-bioinformtics in Cyverse | A description of general cloud computing. |
| Slides for Immuno-biotechnology and Bioinformatics in Community Colleges | A slide presentation overview of the first instantiation of the immuno-bioinformatics course. |
| Introduction to Immuno-Bioinformatics | An early introduction to immuno-bioinformatics |
| AIRR (Adaptive Immune Receptor Repertoire) Format | A standard sequence annotation format for immune receptors. |
| iReceptor | A data discovery platform that facilitates the curation, analysis and sharing of antibody/B-cell and T-cell receptor repertoires (Adaptive Immune Receptor Repertoire or AIRR-seq data) |
File(s)
| Attachment | Size |
|---|---|
| ImmunSeq Analyzer Guide.docx | 4.75 MB |
| ImmunoSeq Exercises.docx | 95.58 KB |
| T cell receptor sequencing of early-stage breast cancertumors identifies altered clonal structure of theT cell repertoire.pdf | 1.17 MB |
| Quake-OfficeHours.pdf | 4.68 MB |